PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001057G0620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 339aa    MW: 35958.9 Da    PI: 4.323
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001057G0620genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-14119169256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      +++GVrw++ +g ++AeIr ps+   r+r +lg+f+taeeAa  ++a + kl+g+
  PH01001057G0620 119 KFHGVRWRP-SGGYAAEIRNPSK---RTRSWLGTFDTAEEAAWKYDAEAIKLHGA 169
                      799******.7*********975...59*************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-17119176IPR016177DNA-binding domain
PROSITE profilePS5103218.571119176IPR001471AP2/ERF domain
SMARTSM003805.7E-23119182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-23119177IPR001471AP2/ERF domain
CDDcd000186.29E-24119175No hitNo description
PfamPF008473.3E-8119168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MNSVQEEGLG ASITEVERME HDDVAVVQPP PPSPSLVKEV KPCAPVGKIV RIICEDKDAT  60
DSSGDETDSG DDGEVCPRGR RVRQCVHEIR LNESPVPGKV KSKAKARVEK VVGEGPSMKF  120
HGVRWRPSGG YAAEIRNPSK RTRSWLGTFD TAEEAAWKYD AEAIKLHGAG AITNFKQPAV  180
AAANASDAPL PAPPSKNGPS GGASYDSSEE SSHAAASHTS VLQSFPPSAI PASEPAMKPR  240
PSPPQPVPPP PPARPQETAE AGCSFQLEDI SGELDSIYGD LDDLINDFPE LPALDFLSDN  300
VLPELQLDDL GVGLSPTGTG WQQVDEFLND VDFTDLEA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9Y5E97e-48A0A0D9Y5E9_9ORYZ; Uncharacterized protein
STRINGORGLA01G0069400.19e-47(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-21cytokinin response factor 4